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Atherosclerosis
Volume 205, Issue 1
, Pages 9-14
, July 2009
Improvements to cardiovascular Gene Ontology
References
- . Creating the gene ontology resource: design and implementation. Genome Res. 2001;11:1425–1433
- Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet. 2000;25:25–29
- . Get ready to GO! A biologist's guide to the Gene Ontology. Brief Bioinform. 2005;6:298–304
- Dimmer EC, Huntley RP, Barrell DG, Binns D, Draghici S, Camon EB, Hubank M, Talmud PJ, Apweiler R, Lovering RC. The Gene Ontology; providing a functional role in proteomic studies. Proteomics 2008; July [Epub ahead of print].
- The Gene Ontology Annotation (GOA) project: implementation of GO in SWISS-PROT, TrEMBL, and InterPro. Genome Res. 2003;13:662–672
- Network analysis of human in-stent restenosis. Circulation. 2006;114:2644–2654
- Identification of biochemical adaptations in hyper- or hypocontractile hearts from phospholamban mutant mice by expression proteomics. Proc Natl Acad Sci USA. 2004;101:2241–2246
- Hypoxia influences the cellular cross-talk of human dermal fibroblasts. A proteomic approach. Biochim Biophys Acta. 2007;1774:1402–1413
- Bioinformatics processing of protein and transcript profiles of normal and transformed cell lines indicates functional impairment of transcriptional regulators in buccal carcinoma. J Proteome Res. 2007;6:3705–3717
- Mortalin: a protein associated with progression of Parkinson disease?. J Neuropathol Exp Neurol. 2008;67:117–124
- Biomarker candidates for cardiovascular disease and bone metabolism disorders in chronic kidney disease: a systems biology perspective. J Cell Mol Med. 2008;12:1177–1187
- . The landscape of human proteins interacting with viruses and other pathogens. PLoS Pathog. 2008;4:e32
- . Interactive three-dimensional visualization and contextual analysis of protein interaction networks. J Proteome Res. 2008;7:104–112
- Integration of biological networks and gene expression data using Cytoscape. Nat Protoc. 2007;2:2366–2382
- . PRISM, a generic large scale proteomic investigation strategy for mammals. Mol Cell Proteomics. 2003;2:96–106
- High-throughput analysis of rat liver plasma membrane proteome by a nonelectrophoretic in-gel tryptic digestion coupled with mass spectrometry identification. J Proteome Res. 2008;7:535–545
- . Proteomic analysis of mouse brain microsomes: identification and bioinformatic characterization of endoplasmic reticulum proteins in the mammalian central nervous system. J Proteome Res. 2008;7:1046–1054
- Toward a confocal subcellular atlas of the human proteome. Mol Cell Proteomics. 2008;7:499–508
- . BioGRID: a general repository for interaction datasets. Nucleic Acids Res. 2006;34:D535–539
- The Biomolecular Interaction Network Database and related tools 2005 update. Nucleic Acids Res. 2005;33:D418–424
- Human protein reference database—2006 update. Nucleic Acids Res. 2006;34:D411–414
- IntAct—open source resource for molecular interaction data. Nucleic Acids Res. 2007;35:D561–565
- . Ontological analysis of gene expression data: current tools, limitations, and open problems. Bioinformatics. 2005;21:3587–3595
- Cardiovascular GO annotation initiative year 1 report: why cardiovascular GO?. Proteomics. 2008;8:1950–1953
- Text-mining assisted regulatory annotation. Genome Biol. 2008;9:R31
- . Getting started in text mining. PLoS Comput Biol. 2008;4:e20
- An evaluation of GO annotation retrieval for BioCreAtIvE and GOA. BMC Bioinform. 2005;6(Suppl 1):S17
- . Drosophila melanogaster: a case study of a model genomic sequence and its consequences. Genome Res. 2005;15:1661–1667
- WormBase: new content and better access. Nucleic Acids Res. 2007;35:D506–510
PII: S0021-9150(08)00749-1
doi: 10.1016/j.atherosclerosis.2008.10.014
© 2008 Elsevier Ireland Ltd. All rights reserved.
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Atherosclerosis
Volume 205, Issue 1
, Pages 9-14
, July 2009
